Note
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Correlation analysis#
from __future__ import annotations
import pprint
from gemseo import configure_logger
from gemseo.problems.uncertainty.ishigami.ishigami_discipline import IshigamiDiscipline
from gemseo.problems.uncertainty.ishigami.ishigami_space import IshigamiSpace
from gemseo.uncertainty.sensitivity.correlation_analysis import CorrelationAnalysis
configure_logger()
<RootLogger root (INFO)>
In this example, we consider the Ishigami function [IH90]
\[f(x_1,x_2,x_3)=\sin(x_1)+7\sin(x_2)^2+0.1x_3^4\sin(x_1)\]
implemented as an Discipline by the IshigamiDiscipline.
It is commonly used
with the independent random variables \(X_1\), \(X_2\) and \(X_3\)
uniformly distributed between \(-\pi\) and \(\pi\)
and defined in the IshigamiSpace.
discipline = IshigamiDiscipline()
uncertain_space = IshigamiSpace()
Then,
we run sensitivity analysis of type CorrelationAnalysis:
sensitivity_analysis = CorrelationAnalysis()
sensitivity_analysis.compute_samples([discipline], uncertain_space, 1000)
sensitivity_analysis.compute_indices()
WARNING - 08:35:11: No coupling in MDA, switching chain_linearize to True.
INFO - 08:35:11:
INFO - 08:35:11: *** Start CorrelationAnalysisSamplingPhase execution ***
INFO - 08:35:11: CorrelationAnalysisSamplingPhase
INFO - 08:35:11: Disciplines: IshigamiDiscipline
INFO - 08:35:11: MDO formulation: MDF
INFO - 08:35:11: Running the algorithm OT_MONTE_CARLO:
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INFO - 08:35:12: *** End CorrelationAnalysisSamplingPhase execution (time: 0:00:00.932582) ***
CorrelationAnalysis.SensitivityIndices(kendall={'y': [{'x1': array([0.31460661]), 'x2': array([0.02366366]), 'x3': array([0.0297978])}]}, pcc={'y': [{'x1': array([0.46282123]), 'x2': array([0.0306214]), 'x3': array([0.0512473])}]}, pearson={'y': [{'x1': array([0.46230446]), 'x2': array([0.02059071]), 'x3': array([0.04979026])}]}, prcc={'y': [{'x1': array([0.47248718]), 'x2': array([0.04368652]), 'x3': array([0.0419606])}]}, spearman={'y': [{'x1': array([0.47177886]), 'x2': array([0.03220921]), 'x3': array([0.04128518])}]}, src={'y': [{'x1': array([0.46220697]), 'x2': array([0.027121]), 'x3': array([0.04542585])}]}, srrc={'y': [{'x1': array([0.4718925]), 'x2': array([0.03849088]), 'x3': array([0.03696642])}]}, ssrc={'y': [{'x1': array([0.21363529]), 'x2': array([0.00073555]), 'x3': array([0.00206351])}]})
The resulting indices are
the Pearson correlation coefficients,
the Spearman correlation coefficients,
the Partial Correlation Coefficients (PCC),
the Partial Rank Correlation Coefficients (PRCC),
the Standard Regression Coefficients (SRC),
the Standard Rank Regression Coefficient (SRRC),
the Signed Standard Rank Regression Coefficient (SSRRC):
sensitivity_analysis.indices
CorrelationAnalysis.SensitivityIndices(kendall={'y': [{'x1': array([0.31460661]), 'x2': array([0.02366366]), 'x3': array([0.0297978])}]}, pcc={'y': [{'x1': array([0.46282123]), 'x2': array([0.0306214]), 'x3': array([0.0512473])}]}, pearson={'y': [{'x1': array([0.46230446]), 'x2': array([0.02059071]), 'x3': array([0.04979026])}]}, prcc={'y': [{'x1': array([0.47248718]), 'x2': array([0.04368652]), 'x3': array([0.0419606])}]}, spearman={'y': [{'x1': array([0.47177886]), 'x2': array([0.03220921]), 'x3': array([0.04128518])}]}, src={'y': [{'x1': array([0.46220697]), 'x2': array([0.027121]), 'x3': array([0.04542585])}]}, srrc={'y': [{'x1': array([0.4718925]), 'x2': array([0.03849088]), 'x3': array([0.03696642])}]}, ssrc={'y': [{'x1': array([0.21363529]), 'x2': array([0.00073555]), 'x3': array([0.00206351])}]})
The main indices corresponds to the Spearman correlation indices
(this main method can be changed with CorrelationAnalysis.main_method):
pprint.pprint(sensitivity_analysis.main_indices)
{'y': [{'x1': array([0.47177886]),
'x2': array([0.03220921]),
'x3': array([0.04128518])}]}
We can also get the input parameters sorted by decreasing order of influence:
sensitivity_analysis.sort_input_variables("y")
['x1', 'x3', 'x2']
We can use the method CorrelationAnalysis.plot()
to visualize the different correlation coefficients:
sensitivity_analysis.plot("y", save=False, show=True)
/home/docs/checkouts/readthedocs.org/user_builds/gemseo/envs/6.0.0/lib/python3.9/site-packages/gemseo/post/dataset/plots/_matplotlib/plot.py:87: UserWarning: This figure includes Axes that are not compatible with tight_layout, so results might be incorrect.
figure.tight_layout()
<gemseo.post.dataset.radar_chart.RadarChart object at 0x7f6e059b9ac0>
Lastly,
the sensitivity indices can be exported to a Dataset:
sensitivity_analysis.to_dataset()
Total running time of the script: (0 minutes 1.186 seconds)