gemseo / post

kmeans module

A k-means classification of the optimization history.

class gemseo.post.kmeans.KMeans(opt_problem)[source]

Bases: gemseo.post.opt_post_processor.OptPostProcessor

The KMeans post processing performs a k-means clustering on optimization history.

The default number of clusters is 5 and can be modified in option.

The k-means construction depends on the MiniBatchKMeans class of the cluster module of the scikit-learn library .

Parameters

opt_problem (gemseo.algos.opt_problem.OptimizationProblem) – The optimization problem to be post-processed.

Raises

ValueError – If the JSON grammar file for the options of the post-processor does not exist.

Return type

None

check_options(**options)

Check the options of the post-processor.

Parameters

**options (Union[int, float, str, bool, Sequence[str]]) – The options of the post-processor.

Raises

InvalidDataException – If an option is invalid according to the grammar.

Return type

None

execute(save=True, show=False, file_path=None, directory_path=None, file_name=None, file_extension=None, fig_size=None, **options)

Post-process the optimization problem.

Parameters
  • save (bool) –

    If True, save the figure.

    By default it is set to True.

  • show (bool) –

    If True, display the figure.

    By default it is set to False.

  • file_path (str | Path | None) –

    The path of the file to save the figures. If the extension is missing, use file_extension. If None, create a file path from directory_path, file_name and file_extension.

    By default it is set to None.

  • directory_path (str | Path | None) –

    The path of the directory to save the figures. If None, use the current working directory.

    By default it is set to None.

  • file_name (str | None) –

    The name of the file to save the figures. If None, use a default one generated by the post-processing.

    By default it is set to None.

  • file_extension (str | None) –

    A file extension, e.g. ‘png’, ‘pdf’, ‘svg’, … If None, use a default file extension.

    By default it is set to None.

  • fig_size (tuple[float, float] | None) –

    The width and height of the figure in inches, e.g. (w, h). If None, use the OptPostProcessor.DEFAULT_FIG_SIZE of the post-processor.

    By default it is set to None.

  • **options (OptPostProcessorOptionType) – The options of the post-processor.

Returns

The figures, to be customized if not closed.

Raises

ValueError – If the opt_problem.database is empty.

DEFAULT_FIG_SIZE = (11.0, 11.0)

The default width and height of the figure, in inches.

Type

tuple(float, float)

database: Database

The database generated by the optimization problem.

property figures: dict[str, matplotlib.figure.Figure]

The Matplotlib figures indexed by a name, or the nameless figure counter.

materials_for_plotting: dict[Any, Any]

The materials to eventually rebuild the plot in another framework.

opt_problem: OptimizationProblem

The optimization problem.

property output_files: list[str]

The paths to the output files.