# Copyright 2021 IRT Saint Exupéry, https://www.irt-saintexupery.com
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License version 3 as published by the Free Software Foundation.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
# Contributors:
# INITIAL AUTHORS - initial API and implementation and/or
# initial documentation
# :author: Francois Gallard
# OTHER AUTHORS - MACROSCOPIC CHANGES
"""Make a discipline from an executable."""
from __future__ import annotations
import logging
import re
import subprocess
from ast import literal_eval
from copy import deepcopy
from pathlib import Path
from typing import Callable
from typing import Mapping
from typing import MutableSequence
from typing import Sequence
from typing import Tuple
from typing import Union
from numpy import array
from numpy import ndarray
from strenum import StrEnum
from gemseo.core.data_processor import DataProcessor
from gemseo.core.data_processor import FloatDataProcessor
from gemseo.core.discipline import MDODiscipline
from gemseo.utils.run_folder_manager import FoldersIter
from gemseo.utils.run_folder_manager import RunFolderManager
LOGGER = logging.getLogger(__name__)
NUMERICS = [str(j) for j in range(10)]
INPUT_REGEX = r"GEMSEO_INPUT\{(.*)\}"
OUTPUT_REGEX = r"GEMSEO_OUTPUT\{(.*)\}"
[docs]class Parser(StrEnum):
"""Built-in parser types."""
KEY_VALUE = "KEY_VALUE"
"""The output file is expected to have a key-value structure for each line."""
TEMPLATE = "TEMPLATE"
"""The output is expected as a JSON file with the following format:
.. code::
{
"a": GEMSEO_OUTPUT{a::1.0},
"b": GEMSEO_OUTPUT{b::2.0},
"c": GEMSEO_OUTPUT{c::3.0}
}
"""
OutputParser = Callable[
[Mapping[str, Tuple[int]], Sequence[str]], Mapping[str, Union[ndarray, float]]
]
"""Output parser type."""
InputWriter = Callable[
[
Union[str, Path],
Mapping[str, ndarray],
Mapping[str, Tuple[int, int, int]],
MutableSequence[str],
],
None,
]
"""Input writer type."""
[docs]class DiscFromExe(MDODiscipline):
"""Generic wrapper for executables.
This :class:`.MDODiscipline` uses template files
describing the input and output variables.
The templates can be generated with a graphical user interface (GUI).
by executing the module :mod:`~gemseo.wrappers.template_grammar_editor`.
An input template file is a JSON file formatted as
.. code::
{
"a": GEMSEO_INPUT{a::1.0},
"b": GEMSEO_INPUT{b::2.0},
"c": GEMSEO_INPUT{c::3.0}
}
where ``"a"`` is the name of an input, and ``1.0`` is its default value.
Similarly,
an output template file is a JSON file formatted as
.. code::
{
"a": GEMSEO_OUTPUT{a::1.0},
"b": GEMSEO_OUTPUT{b::2.0},
"c": GEMSEO_OUTPUT{c::3.0}
}
where ``"a"`` is the name of an output, and ``1.0`` is its default value.
The current limitations are
- Only one input and one output template file, otherwise,
inherit from this class and modify the parsers.
Only limited input writing and output parser strategies
are implemented. To change that, you can pass custom parsing and
writing methods to the constructor.
- The only limitation in the current file format is that
it must be a plain text file and not a binary file.
In this case, the way of interfacing it is
to provide a specific parser to the :class:`.DiscFromExe`,
with the :func:`.write_input_file_method`
and :func:`.parse_outfile_method` arguments of the constructor.
"""
_run_folder_manager: RunFolderManager
"""The object generating unique names for run directories.."""
input_template: str
"""The path to the input template file."""
output_template: str
"""The path to the output template file."""
input_filename: str
"""The name of the input file."""
output_filename: str
"""The name of the output file."""
executable_command: str
"""The executable command."""
parse_outfile: OutputParser
"""The function used to parse the output template file."""
write_input_file: InputWriter
"""The function used to write the input template file."""
data_processor: DataProcessor
"""A data processor to be used before the execution of the discipline."""
def __init__(
self,
input_template: str | Path,
output_template: str | Path,
output_folder_basepath: str | Path,
executable_command: str,
input_filename: str | Path,
output_filename: str | Path,
folders_iter: FoldersIter = FoldersIter.NUMBERED,
name: str | None = None,
parse_outfile_method: Parser | OutputParser = Parser.TEMPLATE,
write_input_file_method: InputWriter | None = None,
parse_out_separator: str = "=",
use_shell: bool = True,
) -> None:
"""
Args:
input_template: The path to the input template file.
The input locations in the file are marked
by ``GEMSEO_INPUT{input_name::1.0}``,
where ``input_name`` is the name of the input variable,
and ``1.0`` is its default value.
output_template: The path to the output template file.
The output locations in the file are marked
by ``GEMSEO_OUTPUT{output_name::1.0}``,
where ``output_name`` is the name of the output variable,
and ``1.0`` is its default value.
executable_command: The command to run the executable.
E.g. ``python my_script.py -i input.txt -o output.txt``
input_filename: The name of the input file
to be generated in the output folder.
E.g. ``"input.txt"``.
output_filename: The name of the output file
to be generated in the output folder.
E.g. ``"output.txt"``.
folders_iter: The type of unique identifiers for the output folders.
If :attr:`~.FoldersIter.NUMBERED`,
the generated output folders will be ``f"output_folder_basepath{i+1}"``,
where ``i`` is the maximum value
of the already existing ``f"output_folder_basepath{i}"`` folders.
Otherwise, a unique number based on the UUID function is
generated. This last option shall be used if multiple MDO
processes are run in the same work folder.
parse_outfile_method: The optional method that can be provided
by the user to parse the output template file.
If the :attr:`~.Parser.KEY_VALUE` is used as
output parser, the user may specify the separator key.
write_input_file_method: The method to write the input data file.
If ``None``,
use :func:`~.write_input_file`.
parse_out_separator: The separator used for the
:attr:`~.Parser.KEY_VALUE` output parser.
use_shell: If ``True``, run the command using the default shell.
Otherwise, run directly the command.
output_folder_basepath: The base path of the execution directories.
Raises:
TypeError: If the provided ``parse_outfile_method`` is not callable.
If the provided ``write_input_file_method`` is not callable.
""" # noqa:D205 D212 D415
super().__init__(name=name)
self._run_folder_manager = RunFolderManager(
output_folder_basepath, folders_iter, use_shell
)
self.input_template = input_template
self.output_template = output_template
self.input_filename = input_filename
self.output_filename = output_filename
self.executable_command = executable_command
self.__use_shell = use_shell
if parse_outfile_method == Parser.TEMPLATE:
self.parse_outfile = parse_outfile
elif parse_outfile_method == Parser.KEY_VALUE:
self.parse_outfile = lambda a, b: parse_key_value_file(
a, b, parse_out_separator
)
else:
self.parse_outfile = parse_outfile_method
if not callable(self.parse_outfile):
raise TypeError("The parse_outfile_method must be callable.")
self.write_input_file = write_input_file_method or write_input_file
if not callable(self.write_input_file):
raise TypeError("The write_input_file_method must be callable.")
self._out_pos = None
self._input_data = None
self._in_lines = None
self._out_lines = None
self.data_processor = FloatDataProcessor()
self.__parse_templates_and_set_grammars()
def __parse_templates_and_set_grammars(self) -> None:
"""Parse the templates and set the grammar of the discipline."""
with open(self.input_template) as infile:
self._in_lines = infile.readlines()
with open(self.output_template) as outfile:
self._out_lines = outfile.readlines()
self._input_data, self._in_pos = parse_template(self._in_lines, True)
input_names = self._input_data.keys()
self.input_grammar.update_from_names(input_names)
names_to_values, self._out_pos = parse_template(self._out_lines, False)
output_names = names_to_values.keys()
self.output_grammar.update_from_names(output_names)
LOGGER.debug(
"Initialize discipline from template. Input grammar: %s", input_names
)
LOGGER.debug(
"Initialize discipline from template. Output grammar: %s", output_names
)
self.default_inputs = {
k: array([literal_eval(v)]) for k, v in self._input_data.items()
}
def _run(self) -> None:
out_dir = self._run_folder_manager.get_unique_run_folder_path()
out_dir.mkdir()
self.write_input_file(
out_dir / self.input_filename,
self.local_data,
self._in_pos,
self._in_lines,
)
if self.__use_shell:
executable_command = self.executable_command
else:
executable_command = self.executable_command.split()
err = subprocess.call(
executable_command,
shell=self.__use_shell,
stderr=subprocess.STDOUT,
cwd=out_dir,
)
if err != 0:
raise RuntimeError(f"Execution failed and returned error code: {err}.")
with open(out_dir / self.output_filename) as outfile:
out_lines = outfile.readlines()
if len(out_lines) != len(self._out_lines):
raise ValueError(
"The number of lines of the output file changed."
"This is not supported yet"
)
self.local_data.update(self.parse_outfile(self._out_pos, out_lines))
[docs]def parse_template(
template_lines: Sequence[str],
grammar_is_input: bool,
) -> tuple[dict[str, str], dict[str, tuple[int, int, int]]]:
"""Parse the input or output template.
This function parses the input (or output) template.
It returns the tuple (names_to_values, names_to_positions), where:
- `names_to_values` is the `{name:value}` dict:
- name is the data name
- value is the parsed input or output value in the template
- `names_to_positions` describes the template format {name:(start,end,line_number)}:
- `name` is the name of the input data
- `start` is the index of the starting point in the input file template.
This index is a line index (character number on the line)
- `end` is the index of the end character in the template
- `line_number` is the index of the line in the file
Args:
template_lines: The lines of the template file.
grammar_is_input: Whether the template file describes input variables.
Returns:
A data structure containing the parsed input or output template.
"""
regex = re.compile(INPUT_REGEX if grammar_is_input else OUTPUT_REGEX)
# , re.MULTILINE
names_to_values = {}
names_to_positions = {}
for line_index, line in enumerate(template_lines):
for match in regex.finditer(line):
name, value = match.groups()[0].split("::")
names_to_values[name] = value
if grammar_is_input:
# If input mode: erase the template value.
start, end = match.start(), match.end()
else:
# If output mode: catch all the output length and not more.
start = match.start()
end = start + len(value)
names_to_positions[name] = (start, end, line_index)
return names_to_values, names_to_positions
[docs]def parse_key_value_file(
_,
out_lines: Sequence[str],
separator: str = "=",
) -> dict[str, float]:
"""Parse the output file from the expected text positions.
Args:
out_lines: The lines of the output file template.
separator: The separating characters of the key=value format.
Returns:
The output data in `.MDODiscipline` friendly data structure.
Raises:
ValueError: If the amount of separators in the lines are not consistent with the
keys and values.
If the float values cannot be parsed.
"""
data = {}
for line in out_lines:
if separator in line:
key_and_value = line.strip().split(separator)
if len(key_and_value) != 2:
raise ValueError(f"unbalanced = in line {line}.")
key, value = key_and_value
try:
data[key.strip()] = float(literal_eval(value.strip()))
except Exception:
raise ValueError(f"Failed to parse value as float {value}.")
return data
[docs]def parse_outfile(
output_positions: Mapping[str, tuple[int]],
out_lines: Sequence[str],
) -> dict[str, ndarray]:
"""Parse the output template file from the expected text positions.
Args:
output_positions: The output position for each output variable,
specified as ``{"name": (start, end, line_number)}``,
where ``"name"`` is the name of the output variable,
``start`` is the index of the starting point in the file,
``end`` is the index of the end character in the file,
and ``line_number`` is the index of the line in the file.
An index is a line index, i.e. a character number on the line.
out_lines: The lines of the file.
Returns:
The output data.
"""
values = {}
for output_name, (start, _, line_number) in output_positions.items():
found_dot = False
found_e = False
# In case generated files has fewer lines
if line_number > len(out_lines) - 1:
break
out_text = out_lines[line_number]
i = start
maxi = len(out_text)
while True:
# The problem is that the output file used for the template may be
# using an output that is longer or shorter than the one generated
# at runtime. We must find the proper end of the expression...
i += 1
char = out_text[i]
if char == ".":
# We found the . in float notation
if found_dot or found_e:
break
found_dot = True
continue
# We found the e in exp notation
if char in ("E", "e"):
if found_e:
break
found_e = True
continue
# Check that we have nout reached EOL or space or whatever
if char not in NUMERICS:
break
if i == maxi - 1:
break
output_value = out_text[start:i]
LOGGER.info("Parsed %s got output %s", output_name, output_value)
values[output_name] = array([float(output_value)])
return values
