Probability distributions based on SciPy

In this example, we seek to create a probability distribution based on the SciPy library.

from __future__ import annotations

from gemseo import configure_logger
from gemseo.uncertainty import create_distribution
from gemseo.uncertainty import get_available_distributions

configure_logger()

<RootLogger root (INFO)>

First of all, we can access the names of the available probability distributions from the API:

all_distributions = get_available_distributions()
all_distributions

['OTBetaDistribution', 'OTDiracDistribution', 'OTDistribution', 'OTExponentialDistribution', 'OTJointDistribution', 'OTLogNormalDistribution', 'OTNormalDistribution', 'OTTriangularDistribution', 'OTUniformDistribution', 'OTWeibullDistribution', 'SPBetaDistribution', 'SPDistribution', 'SPExponentialDistribution', 'SPJointDistribution', 'SPLogNormalDistribution', 'SPNormalDistribution', 'SPTriangularDistribution', 'SPUniformDistribution', 'SPWeibullDistribution']

and filter the ones based on the SciPy library (their names start with the acronym 'SP'):

sp_distributions = get_available_distributions("SPDistribution")
sp_distributions

['SPBetaDistribution', 'SPDistribution', 'SPExponentialDistribution', 'SPLogNormalDistribution', 'SPNormalDistribution', 'SPTriangularDistribution', 'SPUniformDistribution', 'SPWeibullDistribution']

Create a distribution

Then, we can create a probability distribution, e.g. a normal distribution.

Case 1: the SciPy distribution has a GEMSEO class

For the standard normal distribution (mean = 0 and standard deviation = 1):

distribution_0_1 = create_distribution("SPNormalDistribution")
distribution_0_1

norm(mu=0.0, sigma=1.0)

For a normal with mean = 1 and standard deviation = 2:

distribution_1_2 = create_distribution("SPNormalDistribution", mu=1.0, sigma=2.0)
distribution_1_2

norm(mu=1.0, sigma=2.0)

Case 2: the SciPy distribution has no GEMSEO class

When GEMSEO does not offer a class for the SciPy distribution, we can use the generic GEMSEO class SPDistribution to create any SciPy distribution by setting interfaced_distribution to its SciPy name and parameters as a dictionary of SciPy parameter names and values (see the documentation of SciPy).

distribution_1_2 = create_distribution(
    "SPDistribution",
    interfaced_distribution="norm",
    parameters={"loc": 1.0, "scale": 2.0},
)
distribution_1_2

norm(loc=1.0, scale=2.0)

Plot the distribution

We can plot both cumulative and probability density functions:

distribution_0_1.plot()

<Figure size 640x320 with 2 Axes>

Get statistics

Mean

We can access the mean of the distribution:

distribution_0_1.mean

0.0

Standard deviation

We can access the standard deviation of the distribution:

distribution_0_1.standard_deviation

1.0

Numerical range

We can access the range, i.e. the difference between the numerical minimum and maximum, of the distribution:

distribution_0_1.range

array([-7.03448383,  7.03448691])

Mathematical support

We can access the range, i.e. the difference between the minimum and maximum, of the distribution:

distribution_0_1.support

array([-inf,  inf])

Evaluate CDF

We can evaluate the cumulative density function:

distribution_0_1.compute_cdf(0.5)

0.6914624612740131

Evaluate inverse CDF

We can evaluate the inverse cumulative density function, here the quantile at 97.5%:

distribution_0_1.compute_inverse_cdf(0.975)

1.959963984540054

Generate samples

We can generate 10 samples of the distribution:

distribution_0_1.compute_samples(10)

array([ 1.15290838,  1.91008481,  1.26223097,  0.65649019, -0.05638738,
        1.46020569, -0.2139264 ,  1.12808576,  0.86160583, -0.12123384])